tools.png

Install your tools on the CGC

 

The most common bioinformatics tools for dealing with TCGA data come pre-installed on the CGC and are continually maintained. You can add your custom tools to the CGC to run in combination with these. Adding your own tools allows you to bring your software directly to the TGCA data, and to take advantage of the high performance computational power the CGC provides.

THe CGC supports the common workflow language 

The CGC Software Development Kit supports the native execution of Common Workflow Language (CWL) compliant tools and pipelines, so developers avoid lock-in', and their tools remain fully portable. To upload your tool, simply install it inside a Docker container, and push the image to Docker Hub or to the CGC Image Registry, which – for optimization – is hosted alongside the TCGA data. Then, using the CGC tool editor, you can enter all the details of your tool's interface, including details of its command line options, and its required resources.

Make your tools portable 

Once you wrap your tool using the Common Workflow Language, the CGC tool editor automatically generates a CWL description of the tool, which allows the tool to be executed on the CGC as well as any other platform that supports CWL.